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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… Streptomyces are nature's chemical factories. They hold genetic blueprints for dozens of complex compounds, but stay … salt triggers this metabolic shift, the team combined RNA sequencing across multiple time points with Cappable-seq, a technique that precisely maps where transcription …
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Halophytes and heavy metals: A multi‐omics approach to understand the role of gene and genome duplication in the abiotic stress tolerance of Cakile maritima
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Mapping Heat Resistance in Yeasts
… proof-of-concept study, researchers demonstrated that a new genetic mapping strategy called RH-Seq can identify genes that promote heat resistance in the … (39°C/102°F). The Impact One of the challenges in understanding wild populations is that tests to find …
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Data Policy
… of certain types of data to support their use by those generating data. The JGI Data Policy applies to research … not involved with the proposal under which the data were generated (e.g. not PIs or co-PIs) who wish to include … For sequencing or metabolomics projects: data are subject to a  …
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A Collaboration to Improve Plant Genome Annotations Across Species
… comparative transcriptomics. *The HudsonAlpha Genome Sequencing Center works with scientists at the JGI a lot. In … projects such as Expression Atlas and PPRD could help with understanding gene functional roles, but the experimental … more plants are studied? Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing …
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Making a Lichen Together
… and the microalga,  Asterochloris glomerata . To see how gene expression changes when living together versus apart, … nitrocellulose filters in Petri dishes. The scientists also sequenced the fungus and photobiont’s genomes and compared … has opened the door for more incisive investigations into how lichens function. One of their abilities that’s  …
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Conservation of linkage and evolution of developmental function within the Tbx2/3/4/5 subfamily of T-box genes: implications for the origin of vertebrate limbs
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the …
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Frequently Asked Questions: Project Management
… address, click the “Request email change” link. This will generate an email that will go to an administrator to … manager may then schedule and allocate resources for DNA sequencing. … and have not been validated by the JGI, but are provided as general guidance. …
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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The Surprising Structure of a Shrub Willow Sex Chromosome
… strategy we are far more familiar with: differentiating into male and female sexes. For the first time, the sex chromosomes of shrub willow have been sequenced with sufficient resolution to analyze their … need to select and breed cultivars for the next generation. Understanding the mechanisms by which they reproduce can …
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Parallel Evolution of Nacre Building Gene Sets in Molluscs
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