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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … DOE National Laboratories, the Community Science Program (CSP), and external collaborations. The Director ensures the … Reference Genomes. Cell Genomics 2: 100213Nayfach S et al. 2021. A genomic catalog of Earth’s microbiomes. Nat …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … and developed new tools to map that soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) Joint Genome … said, the 1000 Fungal Genomes project, together with other CSP projects, had sequenced over 2,000 fungal genomes. The …
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Natural Prodcast Episode 9: Roger Linington
… products field as it relates to structure elucidation and genome mining, and how we might start to better connect … a podcast produced by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility … want to hear more science from her, check out her podcast, Genome Insider. She talks to lots of great scientists …
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Better Genome Editing for Bioenergy
… included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … a team of researchers sought to disrupt every gene in the genome with CRISPR-Cas9 in order to interrogate each one’s … work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … Enhancers VISTA Cardiac Enhancer Browser ENCODE FaceBase … 2021-  NLM Board of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in Genome Biology & Technology- …
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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research Program, Dr. Roux established … and bacteria. PLoS Biology 21, e3002083 Roux et al., 2021. Ecology and molecular targets of hypermutation in the …
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Uncovering Novel Genomes from Earth’s Microbiomes
… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … cannot be cultivated under laboratory conditions, their genomes can’t be sequenced using traditional approaches. … fields. A public repository of 52,515 microbial draft genomes generated from environmental samples around the …
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2025 NeLLi Symposium
… and Agenda Coming Soon!  Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and … cultivating new Bacteria and Archaea revealed by a recent genome census . Speakers John M. Archibald (Keynote) …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists usually employ … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …
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A Grass Model to Help Improve Giant Miscanthus
… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into how the multiple … environments such as poor soils and drought. The reference genome for M. sinensis, and the associated genomic tools, …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … and strategic objectives of the microbial and metagenome programs. The committee serves as the program's key …
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