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Mission
Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … see below.  … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a DOE Office of Science User … U.S. Department of Energy.   The JGI provides integrated high-throughput sequencing, DNA design and synthesis, …
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High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India
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High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … sparked your interest, and you want to learn more, then I highly recommend David Hopwood’s book called  “Streptomyces … in a year. And that would be a good thing. That would be high. ALISON: I mean, I’ve heard some statistic about how …
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Conservative taxonomy and quality assessment of giant virus genomes with GVClass
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Natural Prodcast Episode 19: Bill Fenical
… from NCI and other programs, we started showing real drug quality in [our] molecules. And that continued on for a … of Petri plates to watch what happens over time. And in the high-nutrient media, we saw all the same stuff, which are … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …
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Zhong Wang
… scientific projects. These solutions include large-scale genome variants analyses, next-generation transcriptome de novo assembly, metagenome and metatranscriptome assembly, Hadoop based on … list is available on Google Scholar . … ALE , assembly quality evaluation software based on Bayesian statistics …
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Frequently Asked Questions: Project Management
… the process. … Guidelines detailing the quantity and quality requirements for samples submitted to the JGI can be … listed on the “info” page for that organism on the Genome Portal . … You can view the status of all public projects on the JGI Genome Portal . The PI and all authorized users can also …
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Kjiersten Fagnan
Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head. In 2018, Dr. Fagnan was part of the Gordon Bell prize winning … and Opioid Addiction,” SC18: International Conference for High Performance Computing, Networking, Storage and …
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Functional Signatures of the Epiphytic Prokaryotic Microbiome of Agaves and Cacti
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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality genome and now crop researchers can work toward … partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane … the genome required a custom pipeline and techniques. High quality primary assembly not only includes a full …
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Expanding Virophage Diversity
… of Science facility, have increased the number of known high quality virophage genome sequences 10-fold through … Paez-Espino  discussed an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The …
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