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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… and applying these engineered ecosystems across various biological contexts. The program fosters intimate, … standardized fabricated ecosystems for microbiome research. Contact If you have questions or would like access to the … which has channels for finding roommates and carpools, contact Margie Lozano ( [email protected] ) …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… to a pathogen. This ‘“alien’” organism — one previously unseen — is, in fact, a microscopic water mold, … ramorum (pronounced: Fy-TOFF-thor-uh ra-MOR-um) the genus in Latin translates to “plant destroyer” and it has … threaten the health of the tree. While drought conditions may slow the progress of SOD, the debilitated trees become …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… to the CSP  New Investigator call for proposals.  Tips: Contact us with your questions ([email protected]) … design, and plan for data utilization are clear. Contact JGI staff for feedback before submitting a proposal. …
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Eelgrass Proves to Be Much Younger Than We Thought
… has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most … throughout its history. Their research, published in  August 2023 in  Nature Plants , was able to assess absolute … Genome Institute Community Sequencing Program (CSP 502951, 2016, Population and evolutionary genomics of …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… first time, a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends govern those … that the virus is not rapidly replicating, but instead may be abiding in the host genome: the strategy of lysogeny. …
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JGI@25: Building a Better Bean
… energy and environmental challenges. While a hill of beans may not seem to amount to much, the common bean (Phaseolus vulgaris) is actually a vital source of protein in many … genome of the common bean. That work was published online June 8, 2014 in the journal Nature Genetics . “Common beans …
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A Step Toward Controlling Soybean Rust
… is the world’s leading soybean producer , and soybeans are used to produce biodiesel. The fungus  Phakopsora pachyrhizi causes Asian Soybean Rust (ASR) … as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien …
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JGI@25: Using Team Science to Build Communities Around Data
… for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these initial efforts: Spatafora and Jason Stajich from UC Riverside would focus on broad sampling of early diverging fungi, and Francis … National Institute for Agricultural Research (INRAE) focused on in-depth exploration of ecology-related groups of …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… that will help solve energy and environmental challenges.   Usually, plants have the upper hand against any kind of … kinds of supplies in the quest to break down plants.  In 2016, her team leveraged transcriptomics and other assays to … natural products . Those results showed that these fungi may be able to provide tools beyond biomass breakdown, …
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Computationally Classifying Fungal Lifestyles
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of  Dothideomycetes fungi. The  work appeared in the June issue of  Studies in Mycology . This work was enabled … had access to over 100  Dothideomycetes genomes, just enough of a sample size to test if a computer algorithm …
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Year in Review: JGI’s 2018 Progress Report Available Now
JGI (isolates here , here and here ), and the data has been used to better understand arsenic mobility and to better …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in the evolution and transition of … associated virus LBVaV; genus Varicosavirus ) which may severely reduce crop yields. Like the typical chytrids …
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