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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… from plants, microorganisms, and environmental samples using targeted and untargeted approaches. The webinar … would depend on the sample. However, we don’t do this because they typically contain salts and other contaminants that interfere with metabolomics analysis.  Q: Can you give us an idea about the scale of an average study? How many …
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Refining the Process of Identifying Algae Biotechnology Candidates
… ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these algae … and carbon dioxide so they can grow, and then harvest for use as biofuels and other bioproducts. As any good cook … a clean energy economy is developing alternative sustainable fuel sources. Developing candidate bioenergy …
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Fishing for Novel Cellulose Degraders
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Using a single-cell screen, they can now identify microbes … which could have a plethora of potential applications to industrial processes. Summary JGI researchers developed a …
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JGIota: Looking Back at Methane-Making Microbes
… those microbial methane-makers. Eventually, that could help us dial back their emissions, while still producing things … collaborators Sinead Leahy (New Zealand Agricultural Greenhouse Gas Research Centre) and Bill Kelly (AgResearch). …
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A One-Stop Shop for Analyzing Algal Genomes
… an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, … genetic underpinnings responsible for these traits takes us closer to harnessing algae for bioenergy and the greater … genomic data on algae into one place, PhycoCosm allows users to easily compile data that answers what genes are …
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Evolution of a Fungal Gene Expression Regulator
… the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may help the pathogens … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like it, are uncovering the true …
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Computationally Classifying Fungal Lifestyles
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … had access to over 100  Dothideomycetes genomes, just enough of a sample size to test if a computer algorithm … (SVM)-based prediction of lifestyle based on 6 gene clusters showed a >95 % accuracy in correctly predicting plant …
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From Competition to Cooperation
… walls, while brown rot cannot break down the lignin but use cellulose. Finally, there are soil saprotrophs, which degrade plant detritus. Despite the different modes of nutrition, many of these … fungal families, including those for which there were previously no genomes of symbiotic species available: 73 …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two … evolved to deal with hot and dry conditions could help us to one day develop plants that are more drought-tolerant. … along their edges. KAROLINA : My work with the JGI focuses on a group of plants called yuccas. If you know Joshua …
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Annual Genomics of Energy & Environment Meeting
Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual …
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Picking Up Threads of Cotton Genomics
… of the five major lineages of cotton;  G. tomentosum ,  G. mustelinum , and  G. darwinii are the others. All of these … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … utilization and increasing the efficacy with which we use natural resources for provisioning society.”   …
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Gene Expression: From On-Off Switch to Dial
… approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of … of essential genes in metabolic networks that were missed using traditional approaches. This novel form of intermediate expression, when used in addition to traditional methods, can offer …
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