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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, …
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Publication Policy
… The purpose of this policy is to establish communication norms around JGI contributions, ensure that all contributors to a research … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI … JGI Staff: Upon request, JGI staff will provide Users with a list of …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of … change. Researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … and others that preferred the hollows. Those genome sequences showed not only that the sex of a sphagnum plant …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the … Program (ETOP) , researchers have developed and improved upon a tool that combines existing DNA sequence binning … isolating and characterizing entire microbial genomes from sequences generated from environmental samples. The work …
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Webinar: PhycoCosm Tutorial
… about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … are based upon? A: This is still work in progress as new genomes are being added. We do plan to publish the tree or … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Alabama Agricultural & Mechanical University Internship Program
… Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in Berkeley, California honing their scientific skills and collaborating with their …
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Making a Lichen Together
… clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could help inform efforts at …
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Old can be new again: HAPPY whole genome sequencing, mapping and assembly
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Genome sequence of the palaeopolyploid soybean
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals have been  … (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Nanyang Technological University aims to generate genome sequences from underrepresented green algae groups in a wide …
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Metabolomics
… JGI by identifying the actual molecules present in an environment that influence system behavior.  Through this identification, metabolomics enables functional genome annotation, improves understanding of the role small … Find more details on the instrumentation we use and our methodology for …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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