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Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization
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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The … break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified other bacteria and microbial processes that support PCE biodegradation. The …
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Emiley Eloe-Fadrosh
… joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research … training in human microbiome research at the Institute for Genome Sciences at the University of Maryland School of … Microbiome Data Collaborative (NMDC). Prospective users with questions on how to partner with the Metagenome Science …
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JGI Scientists Pen Genome Watch Articles
… Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Seshadri. Writing the  Nature   Reviews column all started with an email in 2018.  Tanja Woyke , who leads the  Microbial Program at the JGI, received a message from Andrea …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… and offered a way for researchers to study the planet’s microbial diversity, much of which remains unknown and … year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a … the JGI and Bigelow Lab led to the identification of key microbial culprits in carbon fixation in the dark ocean. …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … we nurture in our workplace and seek to establish with our stakeholders. The guiding principles for … community, and promotes communication and collaboration within the user community. …
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Natural Prodcast Episode 17: Cassandra Quave
… it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of … that we found, indeed, that both formulations had some antimicrobial properties. But the one that was used in … guess ways that these platforms I think could be leveraged better could be perhaps to take deeper looks at the …
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Decoding Yellowstone’s Microbial Mats
… Life as we know it wouldn’t exist without cyanobacteria; they began oxygenating Earth over two … Park to study how cyanobacteria are living, communally, in microbial mats. Along the way, they’ve encountered … new technologies, and made a few discoveries about the microbial mat denizens.  …
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of … user community and supports various user projects in the Microbial Program. In an LDRD-funded project, Dr. Schulz … Molecular Microbiology, University of Vienna (Austria) PhD Microbial Ecology and Bioinformatics, University of Vienna …
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A Grass Model to Help Improve Giant Miscanthus
… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … Department of Energy (DOE) Bioenergy Research Center, along with researchers from the Energy Biosciences Institute, the … sequenced genomes of numerous wild Miscanthus lineages to better understand the genetic diversity of the grass, which …
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Frequently Asked Questions: Project Management
… by your project manager in the initial correspondence with you if the User Agreement and Appendix are active and … may be appropriate alternatives. See specific protocols within the Sequencing Sample Overview file in our Documents Center, and please discuss details with your project manager. …
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