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Natural Prodcast Episode 17: Cassandra Quave
… it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of … that we found, indeed, that both formulations had some antimicrobial properties. But the one that was used in … guess ways that these platforms I think could be leveraged better could be perhaps to take deeper looks at the …
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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
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JGI@25: Strengthening Soybean
… to energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, in crop … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … the first legume species with a published complete draft genome sequence. At the time, the vital global source of …
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Frequently Asked Questions: Project Management
… by your project manager in the initial correspondence with you if the User Agreement and Appendix are active and … listed on the “info” page for that organism on the Genome Portal . … You can view the status of all public … for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The Program aims to better understand the viruses that coexist with humans – the …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different lifestyles. The Science The bacterium SAR324 … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program … the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the … Inc. in Chicago, IL. He did his postdoctoral studies with Carl Woese at the University of Illinois at …
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Frederik Schulz
Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of … user community and supports various user projects in the Microbial Program. In an LDRD-funded project, Dr. Schulz … (2020) Advantages and limits of metagenomic assembly and binning of a giant virus. mSystems. 5 (3) Schulz et al. …
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A Comparison of Microbial Genome Web Portals
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The Integrated Microbial Genome Resource of Analysis
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An Integrated Dataset to Understand Ecosystem Interaction
… the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand how ecosystems work and how healthy they … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … By leveraging metagenomics to sample the entirety of a microbial community out in its natural environment, … the avenues for exploring methane as a source of bioenergy, better understanding the global carbon cycle and greenhouse …
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