Results

Elviz – exploration of metagenome assemblies with an interactive visualization tool
Learn more
Advantages and Limits of Metagenomic Assembly and Binning of a Giant Virus
Learn more
Assembly of Viral Metagenomes from Yellowstone Hot Springs▿ †
Learn more
Bipartite graphs in systems biology and medicine: a survey of methods and applications
Learn more
A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method
Learn more
Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
Learn more
A New Method to Correct for Habitat Filtering in Microbial Correlation Networks
Learn more
I-Min (Amy) Chen
… at Berkeley Lab. Dr. Chen is currently the Microbiome Computational Resource Lead at the JGI, responsible for the … I-MA et al. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic …
Learn more
Cataloging the Microbes that Manage the Health of River Systems
Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols so that researchers could compare results across the varying sampling locations. … and sharing could work across platforms. … This work was partially supported by awards from US Department of Energy …
Learn more
An Automated Tool for Assessing Virus Data Quality
The Science Through advances in sequencing technologies and computational approaches, more and more virus sequences are … being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … boundary clearly defined using functional annotation methods, it was possible to distinguish between metabolic …
Learn more
Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
Learn more
Optimizing de novo genome assembly from PCR-amplified metagenomes
Learn more