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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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Tanja Woyke
… Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research … primary interest and passion. Dr. Woyke stepped into the Microbial Genomics Program Lead position in 2009 and assumed … Tanja Woyke is the Microbial Science Program Head as well as our Deputy of User …
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … A(nswer): Our focus is on fungi, algae, plants, and the microbial world but we also annotated several Phytophthora … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI@25: Strengthening Soybean
… and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … the first legume species with a published complete draft genome sequence. At the time, the vital global source of both … 3 P. pachyrhizi genomes on MycoCosm …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… and offered a way for researchers to study the planet’s microbial diversity, much of which remains unknown and … year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a … cell (seen here in a glass capillary), researchers sequenced and assembled the first complete genome of an …
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BOTany methods: accessible automation for plant synthetic biology
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … Cas9 needs guide RNA to lead it to the correct sequence to snip — but not all guides are effective. To … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User …
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Natural Prodcast Episode 19: Bill Fenical
… powerful people. These were people that really controlled microbial drug discovery. And a guy like me, with no … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And … forward to seeing the data when it finally gets off the sequencers. The pandemic has obviously slowed JGI down a …
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for …
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DOE Metrics
… = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the … and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to …
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Automated annotation of scientific texts for ML-based keyphrase extraction and validation
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