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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have … a number of notable achievements that showcase our collaborations and capabilities to enable great science that … strengths into other plants. A brief timeline of sorghum projects at the JGI: 2009: JGI and collaborators use …
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JGI Portals
… platforms are a key resource for the broader scientific community and require constant developments to meet the ever-changing demands of … databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was … and multidisciplinary nature of DOE mission science projects, this initiative aims to encourage innovative …
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Tracking the Origins of Methane-Producing Microbes
Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … trapped in biomass each year to do so. As such, they are considered to have a substantial influence on the global …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As … up with Karolina at the Plant and Animal Genomes, or PAG conference, when in-person meetings were still a thing, i.e. in January. She talked about her  Community Science Project proposal with JGI, in which she’s studying a special …
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Plant Program
With collaborative user projects, the JGI’s Plant Program delves … challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and …
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Triggering Morel Fruiting
A collaborative team led by Hao Tan from the Sichuan Academy … in China and involving Francis Martin from the Institut National de la Recherche Agronomique (INRA) in France and Igor … source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … (LANL), and DE-AC05-76RL01830 (PNNL). … BioScales project on JGI Genomes Online Database … BioScales project …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper … anything. The collaborative consortium behind the GROWdb project demonstrates not only how researchers can …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” a … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact …
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David Goodstein
With a background in experimental and computational surface physics, Dr. Goodstein held positions … in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative genomic …
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