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Analysis of the Neurotoxin Complex Genes in Clostridium botulinum A1-A4 and B1 Strains: BoNT/A3, /Ba4 and /B1 Clusters Are Located within Plasmids
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Integrating Experimentation with Data
… $500     Students: $200      Postdocs: $250     Industry: $700    Thanks for joining the Joint Genome Institute … featured insightful presentations, dynamic panel discussions, informative poster sessions, thought-provoking … of Energy (DOE) Office of Science national scientific user facilities dedicated to advancing research in bioenergy …
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … “It’s an innovative way to rapidly capture the binding location for most transcription factors in a species,” … as tough as it has been 10 years ago,” he said. “We thought about reconstructing gene regulatory networks, understanding …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive … trees are incorrect or need to be changed, please contact us and we’ll work work it out 2.  Q(uestion): Do you publish … is not based on a genome model with PhycoCosm, how do we go about getting it in your system? A: I think the best way is …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… of California, Berkeley and Berkeley Lab, who discussed the exciting progress in gene editing made possible by … — The Science and Applications of  Genome Editing (Virtual) Jennifer Doudna is a professor at UC Berkeley and a … lot of unlocked questions to answer,” she said. Learn more about Doudna and her latest work at the  Innovative Genomics …
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A More Intuitive Phytozome Interface
… interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  … v13. Below are some answers to Frequently Asked Questions about the transition from Phytozome v12 to v13. Why is it … The ability to user query sequences to gene families What about PhytoMine? PhytoMine, the Phytozome implementation of …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … switchgrass production areas across the U.S., guiding the location of the common gardens. “Gardeners and farmers fully …
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Microbiome Data Science Team
… into data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. … in tackling grand challenges in Biology, with a special focus on microbiome research.  These efforts include … genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts …
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Game On: High School Students Drive Everglades Metagenomics Study
… Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the … the next generation of scientists. She shares her thoughts about the experience below. In the summer of 2018, Jonathan … the Loxahatchee National Wildlife Preserve. They chose this location because much is unknown about the diversity of …
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Evolution of a Fungal Gene Expression Regulator
… elements or transposons that can move to another location in the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may help the pathogens … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was preceded by short … The 2020 JGI-UC Merced interns and mentor/s: Brendan Blasius & Guohong “Albert” Wu Edgar Jimenez & Sharon Greenblum … Li Lei and Virginia Scarlett Jasper Toscani Field & Brian Bushnell Lesly Lopez & Li Lei Lorenzo Scaturchio & Benjamin …
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Partnerships: Adopt-A-Genome
… provided by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the … The purpose of the program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose … JGI products and services while nurturing a fresh cohort of users Reach the next generation of genome scientists and …
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