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The Integrated Microbial Genome Resource of Analysis
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Cataloging the Microbes that Manage the Health of River Systems
… a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … and Environmental Research (BER) grants DE-SC0023084, DE-SC0021350, and DE-AC02-05CH11231. Partial support by …
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A metagenomic perspective on the microbial prokaryotic genome census
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A single-cell genomics pipeline for environmental microbial eukaryotes
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JGI at the AGU Fall Meeting
… on Intensive Agricultural Lands Changes Nitrogen Cycling Microbial Communities and Reduces N2O Production Potential … context for thousands of newly sampled microbial genomes from North American watersheds (Invited)” 4pm CST … Hall D-F poster B45O-1813  : Maggie Bowman, PNNL: “EMSL’s 1000 Soils Project: core collection strategy and data types …
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Evolution of a Fungal Gene Expression Regulator
… 5mC is an important piece of how they regulate their genomes, but is not well understood in fungi. A team of … least one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of Energy (DOE) …
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Frequently Asked Questions: Proposal Submission
… range from raw sequence data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, …
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iPHoP: A Matchmaker for Phages and their Hosts
… opens the possibility of using phages to engineer microbial communities. One day, these phages could boost … of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … reference fungal genome sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, …
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I-Min (Amy) Chen
… for the data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … A, Chu K, Ritter SJ, Reddy TBK, Mukherjee S et al. IMG/VR v4: an expanded database of uncultured virus genomes within a …
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Microbial species delineation using whole genome sequences
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Improving Microbial Genome Annotations in an Integrated Database Context
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