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Igor Grigoriev
… and lignocellulose degradation encoded in the genome sequence of  Schizophyllum commune . Nat Biotech.  2010; 28: …
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Pinning Down a Piece of Photosynthesis
… of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an idea of … the cell, Grosjean used the JGI-developed  guideRNA and Sequence Extraction Tool (gRNA-SeqRET) to produce knock-out …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… in their proposal as long as they’re staying under the sequence cap? A(nswer): Proposals that are looking at …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
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Ancient Algae Reveal Secrets of Plant Evolution
… Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … life.  These led to highly detailed assemblies for three strains of  Zygnema circumcarinatum . Published  May 2024 … plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm portal. …
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A Model System for Perennial Grasses
… Through the JGI’s Community Science Program , JGI sequenced and assembled near-complete genomes of P. hallii … complete) and P. hallii var. filipes (94.8% complete) and resequenced a host of natural collections from across the … experiments and analysis to find relationships between sequence variation and plant stress responses. For example, …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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JGI Accepts 17 Proposals for Community Science Program
… collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently burned …
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iPHoP: A Matchmaker for Phages and their Hosts
… kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program …
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JGI@25: Building a Better Bean
… of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That … farmers and a commercial crop for large producers. The team sequenced and assembled a 473-million basepair genome of the … and researchers across many different labs to be able to sequence a genome.” Since the paper was published in 2014, …
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