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… genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. … as well as atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples …

… from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. … 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed …

… a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … at microbial genomes across a spectrum of burned soils. By connecting microbial genes with functions useful for forest … builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful snapshot of what soils …

… Research uncovers the genetic foundations that helped plants conquer land over 600 million years … Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm portal. …

… DNA for genome sequencing was no easy task. The traditional way of collecting them is through a method called … Amplification to generate enough DNA to put on a sequencer. As previously mentioned, it’s a method that’s … assembly. So while researchers are confident all the DNA sequences came from one cell, including components like …

… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established … (DOE) Office of Science, Office of Biological and Environmental Research (BER) grants DE-SC0023084, DE-SC0021350, …

… JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … learning models that predict biological traits from DNA sequences. The study also confirmed that mitochondrial and …

… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … clearly identifies the four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is …

… Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis …

… uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …

… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the … to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …

… array of microorganisms adapted to living in extreme conditions. At these vents, and underwater volcanoes,  researchers … studied microbial communities across five oceanic regions. In doing so, they found a high degree of variability in … This work was funded by the US-National Science Foundation grants OCE-0728391, OCE-0937404, …