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10 From JGI on the 2019 Highly Cited Researchers List
… the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited Researchers , which includes 10 affiliated with the JGI . The 2019 list focused on Highly Cited Papers, defined in the … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… are.” But according to a new study published September 16, 2021 in Nature Communications , warmer waters and … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … After isolating the algal communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the …
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JGI Workshop at SIMB NP Meeting
… expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …
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Uri Neri
… messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our code would …
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FICUS Overview
… for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily …
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Expanding Virophage Diversity
… increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  …
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FICUS
… available from all the facilities participating in the FY25 call, introduces the resources available from the … useful tips for submitting a successful proposal. … The FY23 FICUS Open Call for Proposals describes the resources … available from all the facilities participating in the FY23 call, introduces the Eco-FAB resource, and contains …
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Streamlining Regulon Identification in Bacteria
… efficacy of RIViT-seq, researchers recently characterized 12 sigma factors and were able to identify the associated … assay. The second step consists of RNA sequencing of whole transcriptomes, and the third is determining the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working … Internship … Cross Species Integration of Single Cell Transcriptomes … Exploring and Visualizing P. hallii Mutant … Root … Cross Species Comparison of Plant Single-cell Transcriptomes of Rice and Arabidopsis Roots … Making Big …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… in this publication during her summer internship in 2018. She selected one of the projects posted by JGI fungal … the most efficient at making proteins likely factors into why fungi have been so evolutionary and ecologically … applications, Wint also developed and tested a gene sequence-based predictor of gene expression levels using …
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Trent Northen
Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large … Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to … V, et al. Reproducible growth of Brachypodium in EcoFAB 2.0 reveals that nitrogen form and starvation modulate root …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, … the bacterial cells on the molecular level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab …
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