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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals also produces an atmosphere-warming gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea …
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JGI announces 2024 New Investigator portfolio
… The JGI is eager to work and share our tools with a widening circle of researchers. That’s why each year we look for … not led any previously-accepted proposals — through the New Investigator call under our Community Science Program . Below find a list of researchers whose proposals were accepted for …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get … enzymes these fungi use to break down wood, and compares genetic diversity between cultivated and wild shiitake … raphanica and L boryana in the Americas. Tracing these phylogenetic relationships suggests that the shiitake …
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JGI Welcomes New UEC Members
… the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect … procedures and the organization of the JGI Annual Meeting. Any investigator who has been an active user of the JGI …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … and a specific microbial host to replicate. Sequencing genetic material directly from samples sidesteps these … over 125,000 partial and complete viral genomes. That study multiplied the number of known viral genes by a factor of …
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Styling for Safety: PPE, It’s the JGI Way
… PPE or Personal Protective Equipment is worn to minimize exposure to hazards that can cause workplace injuries and illnesses.  PPE or Personal Protective Equipment is worn to minimize exposure to hazards that can cause workplace … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was … purpose of this CSP is to better understand methane cycling in mangrove wetlands in south Texas,” he explained. “In …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI … Nayfach and  Nikos Kyrpides , was  recently published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a postdoctoral fellow … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces is more than just a funny word. The … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s … more than 8,500 publicly available metagenome datasets generated from sampling sites around the world, including … in the soil for the first time. The current study applied a multi-step approach to mine, bin and then filter the data …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … that will help solve energy and environmental challenges. In 2009, researchers at the JGI and the Bigelow Laboratory …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … in the continental United States. They also provided multiple access points to the information. The team … resource that provides information at multiple scales from genes to the community level. The Impact Rivers are …
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