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JGI@25: Fueling Investigation into Methane-Making Microbes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … aim is identifying chemical compounds that could inhibit microbial methane production. Another effort is in using …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of … Rambo’s work was overseen by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The … J., Terry, A. et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431, 268–274 (2004). …
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JGI Announces 2025 New Investigator Portfolio
Pictured from left: [Top] Bill J. Baker, Jeff Barrick, Ian Gilman, Louis Graf, Yuxi Guo, … You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel … and environmental DNA sequencing to explore microbial and plant interactions across unique ecosystems, …
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JGI@25: Solving the Mystery of the Missing Oil
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in several Lab …
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI … collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, … novel flow cytometry protocols for targeted recovery of specific microbes. …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and … alga genome) and  MycoCosm (for the fungus genome) to aid analysis. Many of the results were unexpected. For example, …
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants … 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … further drive a strong bioeconomy. Summary Through the Community Science Program of the U.S. Department of Energy …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working … of Rice and Arabidopsis Roots … Making Big Data Metagenomic Clustering Scalable … Cataloging Lineage … of Genomic Variations … Comparative and Functional Genomic Analysis of Genus Roseovarius … Implementing a Scalable …
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