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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… On July 30, UC Merced students and their JGI mentors toasted … to the end of a nine-week virtual internship. The celebration was preceded by short final presentations attended by more than 75 JGI staff. According to Axel …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… DNA for genome sequencing was no easy task. The traditional way of collecting them is through a method called … Amplification to generate enough DNA to put on a sequencer. As previously mentioned, it’s a method that’s … assembly. So while researchers are confident all the DNA sequences came from one cell, including components like …
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Supporting Global Research into Actinomycetes
… word. The 500 species described within the group are responsible for roughly two-thirds of antibiotics, and a deeper … are also abundant in soil and can be used as biocontrol agents and to promote plant growth. It is the largest genus within Actinobacteria and therefore a cornerstone of ActinoBase,  a public platform built on the knowledge …
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Expanding Virophage Diversity
… DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and … of metagenome-assembled genomes (MAGs) directly from sequenced environmental samples without needing to cultivate …
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Corals in Hot Water Get Help From Their Microbes
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a large number … expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …
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2025 NeLLi Symposium
…   Registration has closed   Registration fees: Regular attendees  (LBNL and external): $400  … metabolic and functional capabilities. Take part in the "Sequences to Cultures" Jamboree!  Immediately following the … the Desert Research Institute. Metagenomic and single-cell sequence data have provided a means to access novel …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … of fern biology and, more broadly, land plant evolution. Recent findings in Ceratopteris richardii show a long … richardii marks the first published manuscript of a genome sequence generated through the OGG. For a long time, C-fern …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … community able to not just analyze but also create DNA sequences mimicking an array of microbial life. By … is capable of discovering and modelling complex biological sequences such as biosynthetic gene cluster structures. …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open access ecological data to better understand … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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