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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae
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Beyond linear sequence comparisons: the use of genome-level characters for phylogenetic reconstruction
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Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary
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JGI@25: Fueling Investigation into Methane-Making Microbes
In honor of the JGI's 25th anniversary in 2022, we have revisited a … has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … to provide a cataloged and curated culture and genome sequence resource of rumen microorganisms . Thanks to the …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
As part of the JGI’s 25th anniversary celebration, the 2022 Annual … from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many more meetings and …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern … — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … richardii marks the first published manuscript of a genome sequence generated through the OGG. For a long time, C-fern …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that …
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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated …
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Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species
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The Sphagnome Project: enabling ecological and evolutionary insights through a genus‐level sequencing project
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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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