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A Plant Root Atlas for Tracking Developmental Trajectories
… larger efforts in diverse plant species beyond models,” he said. Cole annotated cell types in the plant root atlas, and … capabilities for DOE mission questions. One of the  first papers ever applying single-transcriptomics to plant … research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… the juicy proteins and lipids that eukaryotes are.” But according to a new study published September 16, 2021 in … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … to be done is reducing the production of CO2 — this is the first and foremost important thing we need to do.” The study …
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JGIota: The Algae Nicknamed ‘Chlamy’
… managed to have a big impact. UC Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … emissions are a massive factor driving climate change. According to the Environmental Protection Agency , methane … to provide a cataloged and curated culture and genome sequence resource of rumen microorganisms . Thanks to the …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… and Roux, has an extensive track record of developing cutting-edge tools for viral genomics. Notable examples … collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse … by NIH Common Fund grant 1U24HL175772-01. This is not the first time Kyrpides and his colleagues have demonstrated how …
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Training the Next Generation of Talent
… University of California, Merced to start orientation as a first-year graduate student in the Quantitative Systems … projects at the DOE JGI that provide hands-on experience in cutting-edge genome research and apply experimental and … to the JGI-UC Merced Summer Internship Program for a successful launch this year, providing horizon-expanding …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein … activity in microbiomes. The initial analysis used over 12,000 metagenomes from diverse environments and grouped … Those similarities, based on their ratios of small DNA sequence fragments called tetranucleotides, are a way to …
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High quality draft genome sequences of Pseudomonas fulva DSM 17717T, Pseudomonas parafulva DSM 17004T and Pseudomonas cremoricolorata DSM 17059T type strains
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Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake
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Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens
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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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Complete Genome Sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T
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