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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. …
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Waiting to Respire
Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy … own food and generate oxygen as a byproduct. The abundance of oxygen shaped the evolution of life on Earth, and led to …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address … change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address … change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or … host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the …
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Graduate Students Get Thesis Research Opportunity at the JGI
Twice a year, the DOE Office of Science Graduate Student Research …
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PhycoCosm Tutorial
Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative …
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The Big Deal About Short Plants
Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), … to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day …   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days …
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