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Fungus Fuels Tree Growth
… in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team found that, …
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Exploring the limit of metazoan thermal tolerance via comparative proteomics: thermally induced changes in protein abundance by two hydrothermal vent polychaetes
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… genomes of uncultivated giant viruses from environmental sequences across the globe, then using these sequences to make inferences about the biogeographic … giant virus genomes reconstructed from environmental sequences is still challenging and even with this study we …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop … … Publication: Tyler BM et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria … resist foreign genetic elements by incorporating short sequences from infecting viruses and phages. In these sequences are virus fragments called spacers, that indicate …
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Uncovering Novel Genomes from Earth’s Microbiomes
… under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and … of metagenome-assembled genomes (MAGs) directly from sequenced environmental samples without needing to cultivate … – that’s pretty remarkable.” Adding Value Beyond Genome Sequences Much of the data had been generated from …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes … in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they also built a high-quality …
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Nigel Mouncey
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A Complex Confection Decoded: Sugarcane Reference Genome
Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …
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10 From JGI on the 2019 Highly Cited Researchers List
Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … After isolating the algal communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the microbes. And in order to …
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JGI Workshop at SIMB NP Meeting
… expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …
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