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Beyond linear sequence comparisons: the use of genome-level characters for phylogenetic reconstruction
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Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary
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Deciphering the evolution of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction
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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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JGI announces final round of 2022 Functional Genomics awardees
… and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final six …
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science … developed and applied novel computational and experimental sequence-based methods for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in … and Viola Willemsen. "Two deeply conserved non-coding sequences control PLETHORA1/2 expression and coordinate … Selected Publications …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … this collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… at the University of California, Berkeley and the Joint Genome Institute, a DOE Office of Science User Facility, … Ec YcgR, within the Nano-lantern scaffold. They then mined sequence databases for homologous YcgR proteins and chose a … These 92 homologues were synthesized as codon optimized sequences and cloned into the Nano-lantern scaffold. Because …
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Overview of the Genomes OnLine Database (GOLD)
… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… lysogeny, they can insinuate themselves inside the host’s genome, living quietly and replicating with their host … the predator-prey dynamics in these mats helps constrain models that estimate biogeochemical fluxes. Summary … National Laboratory, used single-cell sequencing to sequence both a cell’s genome and detect accompanying viral …
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Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome
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