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2023 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … in studies of complex biological and environmental systems. We optimize our service to the community through …
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JGIota: The Algae Nicknamed ‘Chlamy’
… is also a faculty scientist in the Environmental Genomics & Systems Biology Division of the Berkeley Lab Biosciences Area.] …
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Georg Rath
… Mr. Rath has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the boundary of life science and computational science with notable stops at NERSC, IMBA (Institute of Molecular Biotechnology, Vienna) and the High Field MRI …
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2025 Progress Report
… to advance biotechnology. Mission  As a U.S. Department of Energy Office of Science user facility supported by the Biological … in studies of complex biological and environmental systems. We optimize our service to the community through …
Learn more
Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. Viruses play … pretty important role in the cycling of nutrients in these systems.” -Mike Wilkins, Colorado State University GI users …
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Virus Discoveries that Keep Getting Bigger
… single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … infect microeukaryote hosts. In doing so, they influence ecosystem-level nutrient cycling and carbon storage. For … reference genome, to sift for snippets of giant viruses in metagenomes. This has been useful in marine environments, …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … the Changing Planet (download a copy at jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of Science … but it also requires a deep understanding of biological systems. The JGI strategic plan lays out how users and the …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… to Antarctica’s photosynthetic mats — to reveal how these systems adapt and contribute to global biogeochemical … degradation.  “We are  very excited to see the outcome of the innovative research  being proposed by this year’s … CSP investigators,” said Tanja Woyke, Deputy Director of JGI’s User Programs. “Many of these projects are large in …
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Virus-Microbe Interactions of Mud Island Mangroves
… a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was conducted at the JGI through the DOE … work was overseen by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and David …
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Extracting the Secrets of Secondary Metabolites
… survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … effectiveness has historically been limited due to the lack of robust tools available for carrying CRISPR into … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 … Internship co-founder Axel Visel and UC Merced Quantitative Systems Biology professor Carolin Frank reflected on the …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … & Environment Meeting: “What we wanted to do was apply a systems biology approach to the oil spill, looking at …
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