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JGI@25: Following Fungi that Pry Apart Plant Polymers
… sample, or a rumen sample, you’re going to find beautiful diversity.”  Within that diversity of bacteria and fungi, O’Malley and her team are …
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T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
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The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing
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A most wanted list of conserved microbial protein families with no known domains
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of … much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… first published manuscript of a genome sequence generated through the OGG. For a long time, C-fern has served as a …
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Jeremy Schmutz
… Genome Institute and the collaborative projects funded through the CSP program. In addition to continuing to … Selected Publications …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… JGI is uniquely positioned to enable this kind of science; through its DNA Synthesis Science Program , the JGI enables … the spotlight on JGI’s DNA design and synthesis superpower. Through a series of case studies, JGI scientific users share … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
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DOE JGI Interns Share Their Summer Experiences
… This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. … at their desks. As part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns … Graduate Internship Program, Susannah Tringe and Axel Visel hosted Imelda Forteza and Sabah Ul-Hasan , respectively. …
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Enlarging Windows into Understanding Gene Functions
… as a stepping stone to studying many genomes simultaneously through multiDAP, which allows researchers to conduct … of Biotin DAP-seq and multiDAP allows for ultra high throughput discovery of transcription factor binding sites … science we have implemented these two new methods as a high-throughput JGI capability supported by liquid-handling …
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Hiroshi Otani
… CouR, a MarR family transcriptional regulator, is modulated through a novel mechanism. Nucleic Acids Res. 44, 595-607. … Publications …
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