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Tracing the Evolution of Shiitake Mushrooms
… on every continent besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, and … enzymes these fungi use to break down wood, and compares genetic diversity between cultivated and wild shiitake …
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An Integrated Dataset to Understand Ecosystem Interaction
… to large ecosystem-level processes for the first time. By collecting data from 27 different poplar ( Populus … Dubbed “the” bioenergy tree, poplars are known for their genetic diversity. They hold economic value as both biofuel … is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by the U.S. …
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Gut Fungi: Unexpected Source of Novel Chemicals
… to help bolster the bioeconomy. Summary A team led by Michelle O’Malley, a chemical engineer at the University … horse in Massachusetts, in their hunt for anaerobic fungi. By growing extracts without oxygen in ruminant fluid — which … Swift — verified that the fungi expressed biosynthetic gene clusters, which are “building blocks” of natural …
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a … Compensation, and Liability Act (CERCLA) was enacted by Congress in 1980 for Superfund sites which are hazardous … (NCRR) (5P20RR016480-12) and the National Institute of General Medical Sciences (NIGMS) (8 P20 GM103451-12) from …
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Alabama A&M Interns Access An Abundance of Knowledge
… to the JGI for research training experience. Enabled by the DOE RENEW initiative, undergraduate student Ti’Yanna … to gain hands-on experience in molecular biology and plant functional genomics, because this work is essential for …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… in the Mangroves The bacterium itself was discovered by Olivier Gros, a marine biology professor at the … and a co-first author on the study, performed the 16S rRNA gene sequencing to identify and classify the prokaryote. “I … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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A Complex Confection Decoded: Sugarcane Reference Genome
The Science Considered the world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar … the sugarcane cultivar R570 has been  published in  Nature by an international consortium. With the genetic code of sugarcane, researchers were able to map the …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… the bridge to help scientists and researchers achieve their analysis goals. Offering this tool establishes the JGI as a … it’s difficult to link the connections to them from the genetic elements that scientists have found, e.g. plasmids … a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy …
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Tanja Woyke Elected to American Academy of Microbiology
… heads the Single Cells group. She has also served as the Functional Genomics Department Head for the Environmental … developing and harnessing single-cell methods to access the genetic material of uncultivated microbes and link their … am thrilled to see Dr. Woyke’s important work acknowledged by this most prestigious honor,” said Axel Visel , JGI …
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Three Join the JGI User Executive Committee
Wilbanks has served on review panels for the JGI’s Functional Genomics CSP and the JGI-EMSL FICUS programs and …
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Frederik Schulz
… . Camargo A. et al. 2023. Identification of mobile genetic elements with geNomad. Nature Biotechnology . Schulz … Academic Exchange Service”) scholarship (2008-2009) VDI (“Association of German Engineers”) award for exceptional … academic achievements (2008) … Education … Selected Publications … Awards and Service …
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New Research Sheds Light on Diversity in the Deep Sea
… conditions. They identified 511 new or recently discovered genera of bacteria and archaea. Many of the samples shared a … metagenomic sequencing to the study as well as  genome analysis, providing authors a more complete picture of the … biofuel production and more. … This work was funded by the US-National Science Foundation grants OCE-0728391, …
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