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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … lysogeny, they can insinuate themselves inside the host’s genome, living quietly and replicating with their host … National Laboratory, used single-cell sequencing to sequence both a cell’s genome and detect accompanying viral …
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High quality draft genome sequences of Pseudomonas fulva DSM 17717T, Pseudomonas parafulva DSM 17004T and Pseudomonas cremoricolorata DSM 17059T type strains
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Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome …
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Rex Malmstrom
Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI … genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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JGI announces 2023 CSP Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users … synthesis and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six researchers …
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who … synthesis and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions allows …
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SpaRC: scalable sequence clustering using Apache Spark
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Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing
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Protein structure determination using metagenome sequence data
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Functionally conserved enhancers with divergent sequences in distant vertebrates
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