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… the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists … artificial intelligence to decode the language of protein sequences and obtain hints of their possible functions. Yet … efforts were limited to the realm of already-known protein sequences.  “In this endeavor, we have not only ventured …

… Ec YcgR, within the Nano-lantern scaffold. They then mined sequence databases for homologous YcgR proteins and chose a … These 92 homologues were synthesized as codon optimized sequences and cloned into the Nano-lantern scaffold. Because …

… genomes of uncultivated giant viruses from environmental sequences across the globe, then using these sequences to make inferences about the biogeographic … giant virus genomes reconstructed from environmental sequences is still challenging and even with this study we …

… species, Phytophtora sojae, which imperils soybean harvests. The subsequent comparative analysis of these two … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop … of community members in their neighborhoods and nearby forests with the right tools to track infection. The parallel …

… under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and … of metagenome-assembled genomes (MAGs) directly from sequenced environmental samples without needing to cultivate … – that’s pretty remarkable.” Adding Value Beyond Genome Sequences Much of the data had been generated from …

… algae. But human-induced climate change , a new study suggests, is displacing these important cold-water communities … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … After isolating the algal communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the …

… hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. …

… and Identification of Mitochondrial Plasmids from DNA Sequence Moitrish Majumdar Mentors: Bikash Shrestha, Crysten …

… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes … in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they also built a high-quality …

… at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria … resist foreign genetic elements by incorporating short sequences from infecting viruses and phages. In these sequences are virus fragments called spacers, that indicate …