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Expanding Virophage Diversity
… in common: major and minor capsid proteins (MCP and mCP, respectively), ATPase involved in DNA packaging, and PRO, a … maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… As part of the ongoing partnership between DOE JGI and UC Merced to … in science and research, two undergraduate students from UC Merced recently had summer internships in Walnut … 99 students who attended, representing 9 UC campuses, 10 special merit posters/presenters and 10 honorable mentions …
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JGI Announces 2026 New Investigator Portfolio
… Pictured from left: [Top row]: Emily G. Aguirre, Shauna M. Bennett, … Kumar Gautam, Gareth Gillard, Audrey Goeckner, Jennifer Goff, Sarah Gonzalez Henao, Yang Hai, Julia G. Harenčár, … accepted proposals.  The New Investigator call , part of our  Community Science Program , allows us to work and …
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The fungus that made itself at home
… habitat. The Science By comparing genetic information from similar organisms, researchers have gained insights on … plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the fungus has responded to manmade changes in its ecological habitat, …
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
… While summer interns at the JGI from multiple programs had their own goals to achieve, they constantly collaborated with each other on new ways of presenting and researching science. …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between … The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … Horonobe Underground Research Laboratory, Hokkaido, Japan. From samples of both environments, they used fluorescence  …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The … that can be converted to energy, are made up heavily of sphagnum mosses.  New research identifies sex chromosomes in … soil carbon. The process to harvest energy-generating peat from these boggy wetlands produces an estimated 5% of annual …
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The JGI Data Portal: Improving User Experience
… JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal … from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a … team’s ultimate goal is to allow scientists to search for specific types of data across organisms, enabling them to …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their … Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … can also act as a protective layer insulating permafrost from the warming regional temperatures. For this reason, the …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five years of innovation … specific metabolic processes. A third approach steps away from reconstructing genomes directly from the environment …
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … have also collaborated to advance computing infrastructure and analysis. This way, JGI users — both primary, … users — have access to high-quality, assembled datasets from all of this information. The JGI aims to create …
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