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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… me to get even more interested in how general environmental stressors, um, alter microbial biomass and then what the … are for the ecosystem. ALISON:  So, Ed is trying to understand how the molecules in tiny microbes can impact … could become more sustainable through applications of microbiome science; our water quality, our water resource …
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The Expanding Universe of Methane Metabolisms in Archaea
… suggest the diversity of methane metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature … , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. … the researchers found evolutionary relationships between methanogenesis, methanotrophy, and short-chain …
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A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. That portal … fungal, plant, viral, and metagenome data is currently underway. …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa Catalina mountains of Southern Arizona
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Tracing the Evolution of Shiitake Mushrooms
… use to break down wood, and compares genetic diversity between cultivated and wild shiitake populations. The Impact … hemicellulose, and the toughest molecule, lignin. Understanding Lentinula genomes and their evolution could … Office of Science of the US Department of Energy operated under contract no. DE-AC02-05CH11231. …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… cytotypes diverge in their response to climate variations between the common gardens, indicating a generalist … like switchgrass respond to pronounced climate shifts. (C4 plants use a more efficient form of photosynthesis that … loss, compared to the process used by most plant species.) Understanding how the interplay between gene flow, …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… and lab cultivation. “We need those lab studies to really understand what the organisms can do. And we need the … the rhizosphere but also abundant everywhere in the earth’s soils. While she admits that it “0.25% doesn’t seem like a … (referring to the abundance of phenazine producers in the soil), it’s actually quite significant knowing that there’s …
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Marine Microbe Contains Multitudes
… many varied environments? Now, a recent study published in Microbiome has uncovered that SAR324 encompasses four … carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms that SAR324 and other microbes … , and relying on the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Model Fern Reveals Insight into DNA Thievery in Ferns
… incredibly complex — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, … in order to protect themselves from environmental stresses, ferns’ secondary metabolites and associated genes … history of a pivotal plant as well as the evolution of seed plants, the fern’s distant cousin. Ceratopteris richardii, …
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