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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most of them archaea. The …
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Introducing New Members of the JGI User Executive Committee
… new members to their User Executive Committee (UEC) – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six … serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons … other scientific organizations. Fungal biologist Stajich from UC Riverside sees the JGI’s open application process …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants …
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JGI announces final round of 2022 Functional Genomics awardees
… Twice each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help translating genomic …
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Integrating Experimentation with Data
…   Registration for this meeting has closed           Registration fees:                   … in Seattle, Washington.  Topics included:  Environmental Microbiomes Biodesign and Synthetic Biology AI/ML-enabled … The JGI and EMSL are U.S. Department of Energy (DOE) Office of …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using … ability make zealexins, and harnessed gene expression data from these lines to identify genes associated with zealexin … Research was supported by grants from the USDA NIFA AFRI (1758976 to A.H. and E.S.) for …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which allows …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … to have with a faster-cooking bean itself.” The original reference genome yielded what are now widely-used molecular … P. vulgaris on Phytozome … Plant Datasets …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen … breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias …
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a large number of secondary metabolites yet to be discovered and their … a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from …
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Genome organization of the vg1 and nodal3 gene clusters in the allotetraploid frog Xenopus laevis
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