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Identifying the Microbial Cleanup Crew at a Superfund Site
… break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy (DOE) Joint … at the NRAP site. However, the microbial strain’s genome sequence was not in IMG/M when the NRAP samples were …
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … to build and position JGI as a leading integrative genome science user facility. In addition to serving as JGI … of Energy biology programs, and represents the Joint Genome Institute at national and international forums. …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly … in flowering plants, or angiosperms, suggesting they are evolutionarily conserved across plant lineages. They … framework provided by these high quality reference genome sequences could help researchers better understand related …
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Comparative analysis of the transcriptomes of Populus trichocarpa and Arabidopsis thaliana suggests extensive evolution of gene expression regulation in angiosperms
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SpaRC: scalable sequence clustering using Apache Spark
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Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing
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Protein structure determination using metagenome sequence data
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Functionally conserved enhancers with divergent sequences in distant vertebrates
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Primer and platform effects on 16S rRNA tag sequencing
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BioPig: a Hadoop-based analytic toolkit for large-scale sequence data
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Sequencing and Analysis of the Sex Determination Region of Populus trichocarpa
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