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… plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the … back in 2014.  Several components of that codebase are no longer supported, and there are now much more powerful and … PhytoMine? PhytoMine, the Phytozome implementation of the InterMine data warehouse, is still available in v13. However, …

… The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland … factors shaping the assembly of fungal endophytes across land plants and lichens, mentioned her interest in … eligible for election to the UEC. Members serve three-year terms and can serve no more than two consecutive terms. In …

… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science … Tringe , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science … Student Research (SCGSR) program . Her research project, “Microbial Community Structure and Methane Production in …

… Congratulations to Tanja Woyke, who has been awarded the van Niel … Woyke as a pioneer in uncovering the hidden diversity of “microbial dark matter”–that uncultured and unknown majority … American Academy of Microbiology (AAM). She has led JGI’s Microbial Genomics Program since 2009 and heads the Single …

… at the JGI Berkeley Lab offers a variety of programs to help inspire and train the next generation of STEM … sat down with interns hosted at the JGI through three different internship programs – some managed by the Lab – to … if I get in with them this coming fall and spring term. Deanna Beatty: Congratulations. That's awesome. Oliver …

… [subhed -- copy to summary above^ as well ] The Science The recipe for … fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide so they can grow, and … the right ingredients. Researchers collaborating across multiple institutions have sequenced and analyzed the …

… Proposals aim to sequence and annotate genomes from Antarctica to Africa … Their presence reduces the need to add fertilizers to the soil. diCenzo’s proposal is also notable as he had an … he said. “Although in my specific case the projects are different for the two proposals, I can see the New …

… Register here The workshop is addressed to students and professionals of biology, biomedical … fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the … will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by …

… and met local wildlife (a marmot!) as they’ve sampled the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains. These lakes are isolated, but varied. They’re a great way to see how climate change affects freshwater ecosystems, and …

… have known that many datasets miss a key part of microbial genomes: the mobile genetic elements, or MGEs, … and new analysis methods are bringing this mobilome into light, and opening up new options for engineering these … about their recent work on a time series from Sweden’s Stordalen Mire. …

… chilly waters of Antarctica, tiny ocean-dwellers called phytoplankton play an outsize role in cycling carbon and … their essential nutrients, too.  This work is part of a long-term collaboration with the JGI Algal Program, which … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …

… download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only … is to allow scientists to search for specific types of data across organisms, enabling them to conduct more complex … The JGI/Truss team has talked to dozens of researchers to determine what they need and expect from JGI tools. “We’re …