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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant … viruses outnumber surface microbes 10 to 1, and 20% to 40% of the microbes are infected at any given time. … was done by the JGI, and proteomics and metabolomics analysis and microscopy at EMSL. The team infected the …
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JGI announces 2025 Functional Genomics awardees
… Woolston. ] Each year, the JGI accepts proposals for state-of-the-art functional genomics research from scientists who … synthesis and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions … transcriptional network mapping, developing microbial systems to convert renewable feedstocks into advanced …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … carbon and nitrogen fixers in alpine and high latitude ecosystems, deciphering their internal molecular mechanisms can … alga genome) and  MycoCosm (for the fungus genome) to aid analysis. Many of the results were unexpected. For example, …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference … the perennial grass Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into … and Environmental Research under Award Number DE-SC0018420. The work conducted by the U.S. Department of Energy …
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Introducing New Members of the JGI User Executive Committee
… serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons for wishing to … aims to help overcome common user bottlenecks in access, analysis and sharing of JGI-generated data. She is also …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … how these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP New Investigator … improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and used by …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … play a critical role in the global carbon cycle, and are of significant interest for their potential contributions to … research of these newly found methanogens  in diverse ecosystems with  support from a DOE Established Program to …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More … own food and generate oxygen as a byproduct. The abundance of oxygen shaped the evolution of life on Earth, and led to … fellow Paula Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed Margulisbacteria, …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March … at Lawrence Berkeley National Laboratory, is located in one of those counties. The shelter-in-place order has since been … In this brief captioned video, JGI Chief Informatics Officer Kjiersten Fagnan reflects on the personal and …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard about the JGI synthesis … and its applications. “I moved to UC Davis in 2014,” recalled Philipp Zerbe of the University of California, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… Affiliates. When: August 29th, 3:00 pm – 5:30 pm 3:00 pm – 4:15 pm: Panel discussion, Q&A followed by: 4:15 pm – 5:30 pm: Hosted Hoppy Hour @ Calicraft Brewing, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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A Step Toward Controlling Soybean Rust
… causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien Duplessis of the French National Institute for Agricultural Research …
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