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Polar Phytoplankton Need Zinc to Cope with the Cold
… chilly waters of Antarctica, tiny ocean-dwellers called phytoplankton play an outsize role in cycling carbon and … on microalgal communities across different ocean latitudes from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of evidence showing that …
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Tracking the Origins of Methane-Producing Microbes
… Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over … user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform … small pools of cells that were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) …
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Soil virus offers insight into maintaining microorganisms
… portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative … of genetic diversity and capable of transferring genes from one host microbe to another, which can have a … carbon cycling .  The team was led by researchers from the Pacific Northwest National Laboratory (PNNL), with …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 1
… Trubl, a virologist at Lawrence Livermore National Laboratory, wants to understand how viruses impact the release of greenhouse gases from Arctic permafrost. But to see what they’re doing, he …
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The More the Merrier: Making the Case for Plant Pan-genomes
… abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from … in a single reference genome is insufficient. “We really have to evaluate polyploid genomes in a pan-genomic …
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Filling in the Plant Tree of Life
… What if we understood plants and how they adapt to their ever-changing environments better? We could unlock … and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project …
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IMG/VR
… the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage novel capabilities of IMG/VR to browse and …
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest … (Berkeley Lab). They were selected through peer review from 41 full proposals out of 50 letters of intent … in the Antarctic Peninsula. Additionally, the proposal from Viola Krukenberg at Montana State University …
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The Soil Blooms Green
… Every fall, a mysterious green growth appears on top of farmers’ fields: a microbial community that might be … researchers Mary Ann Bruns and Terry Bell are digging in to understand how. …
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JGIota: Looking Back at Sequencing for Soybeans
… With a full genome sequence, researchers have been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear more about that work from researchers Gary Stacey (University of Missouri), Peter …
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Creating an Energy Market for Miscanthus
… a bioenergy plant? Meet Miscanthus , an attractive addition to your garden and a potential fuel for the future. But, to be competitive in the market, both energy policy and … Miscanthus will need some upgrades. In this episode, hear from scientists working on understanding Miscanthus biology …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces is more than just a funny word. The 500 species … understanding of the bacteria potentially holds the key to discovering new antiviral medicines and treatments for …
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