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Tracking the Origins of Methane-Producing Microbes
… Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of methane a year, which … user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform … User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … for community sequencing projects and heads R&D efforts to expand the metabolomics capabilities and product … techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in support …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces is more than just a funny word. The 500 species … understanding of the bacteria potentially holds the key to discovering new antiviral medicines and treatments for …
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Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279T), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia
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Transcriptomic data sets for Novosphingobium aromaticivorans DSM12444 and a ΔSARO_RS14285 mutant grown in the presence of glucose and either protocatechuic, vanillic, syringic, or 4-coumaric acid
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Novel bacterial clade reveals origin of form I Rubisco
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DOE JGI Interns Share Their Summer Experiences
… This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the … genomic data at a computer; a few had the opportunity to spend time out in the field, work at the lab bench, and also do …
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Streamlining Regulon Identification in Bacteria
… technology could speed up associating transcription factors with their target genes. The Science Regulons are a … the third is determining the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given … experimentally verified in S. coelicolor . With results from the research, RIViT-seq data have increased the …
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Soil virus offers insight into maintaining microorganisms
… portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative … role in how carbon is processed and cycled in soils. Ultimately, changes in  soil carbon content can influence … of genetic diversity and capable of transferring genes from one host microbe to another, which can have a …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each … our largest and most successful one. It’s proven to be a really good model for us that we try and continually … all the work that went into this program was the feedback from the graduate student interns; “it changed what I want …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… This is excerpted from the full announcement “ Berkeley Lab Receives Multiple … Computing Sciences site. Lawrence Berkeley National Laboratory (Berkeley Lab), the National Energy Research Scientific … community moving forward and to assemble, for the first time these large environmental  microbial data sets for JGI …
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The Mobilome in the Mire
… and new analysis methods are bringing this mobilome into light, and opening up new options for engineering these … Simon Roux (JGI) as they talk about their recent work on a time series from Sweden’s Stordalen Mire. …
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