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An Automated Tool for Assessing Virus Data Quality
… perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps … these sequences may be tainted by the presence of non-viral genes. Up to this point, there has been a lack of fast and … Foundation (FAPESP). A.P.C. received a scholarship #2018/04240-0 from FAPESP. … CheckV on IMG/M Data portal … …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… (NCRR) (5P20RR016480-12) and the National Institute of General Medical Sciences (NIGMS) (8 P20 GM103451-12) from …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… contains about 6% of the human genome . They discovered genes linked to conditions such as cardiovascular disease, … about 2% of the human genome. They were interested in genes involved in repair of DNA damage, and those associated … 3% of the human genome. They wanted to learn about the genes implicated in the development of breast and prostate …
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Viruses Reprogram Cells into Different Virocells
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Mindfully Moving JGI
… labs in one long building at Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing … unneeded Lab tagged equipment, recyclables, and general waste that would actually go to the landfill. … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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JGI at the AGU Fall Meeting
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric … environments without oxygen through a process called methanogenesis. Methanogenic microorganisms therefore play a … thought to be the only microorganisms capable of methanogenesis —  it’s the metabolic process these little makers …
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New Research Sheds Light on Diversity in the Deep Sea
… conditions. They identified 511 new or recently discovered genera of bacteria and archaea. Many of the samples shared a high prevalence of genes involved in sulfur and nitrogen metabolism, as well as …
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Cataloging the Microbes that Manage the Health of River Systems
… resource that provides information at multiple scales from genes to the community level. The Impact Rivers are … sampling locations. Metatranscriptomic information was also generated. The 3.8 trillion bases or Terabases of sequencing …
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Honey Bee Gut Microbiota Divvy Up Dinner
… — cupids of the plant world facilitating the remixing of genes in the next generation of flowering vegetation. In return for their … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… loss of cell walls and a complex pattern of evolution for genes related to eating plant compounds in both the oceanic …
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Taking Stock of the Known and Unknown Microbial Space
… biodiversity. Using publicly available genome sequence data generated over the past three decades, their study assesses … the estimated diversity of Bacteria and Archaea With phylogenetic diversity standing in as a representative measure of … they used five universally conserved, protein-coding marker genes on nearly 2 million genomes, including isolates, …
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