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The Fungi That Survive In Antarctica
… fungi are microscopic and mighty. They survive everywhere from Antarctica to Joshua Tree National Park, despite extremely harsh … Laura Selbmann and Claudia Coleine are working with scientists from around the world – and the JGI – to …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the Future … (SFA²F) meeting brings together established and emerging scientists from academia, industry, and government organizations for …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in support … samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced mass spectrometry …
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The More the Merrier: Making the Case for Plant Pan-genomes
… abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … When they tested the screen method on a microbial community from geothermal hot springs, they uncovered a novel …
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Computationally Classifying Fungal Lifestyles
… learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Expanding Virophage Diversity
… maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … Virus)—for the virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… synthase gene family across eucalypt lineages. The Science From the distinct smell of eucalyptus to the flavor of wine, terpenes are ubiquitous. A diverse … Previous analysis of the E. grandis reference genome, an international effort by a team that included researchers at …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome … (IMG/M) platform — has been developed to help inform scientists and researchers more about the patterns and … protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein identified from …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Viruses Reprogram Cells into Different Virocells
… like one, is it still a duck? For a team led by researchers from The Ohio State University and the University of … changes in marine microbes, the answer is no. They refer to the infected microbial cells as virocells, a change in … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Building Sphagnum Genomic Resources
… carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on … can also act as a protective layer insulating permafrost from the warming regional temperatures. For this reason, the …
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