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JGI@25: Cow Rumen and the Early Days of Metagenomics
… Rumen microbes have the ability to break down hardy plant cell walls and therefore hold clues to how humans … one of the challenges of developing alternative fuels from plants is the high cost and resource requirements of … from environmental samples — to identify over 27,000 microbial genes. These genes were identified based on their …
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2023 Progress Report
… in studies of complex biological and environmental systems. We optimize our service to the community through …
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Expanding Virophage Diversity
… available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which … were found in diverse habitats including the air, plant rhizosphere, wastewater, and even animal and human … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Ben Bowen
… with high-performance computing and metabolite atlases. Metabolites, 5(3), 431–442. Yang, J., Rubel, O., Prabhat, …
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Improving the Cacao Genome and Phytozome
… brands couldn’t exist without cocoa.  But today the plant is under threat due to climate change and devastating … with others to develop healthier and more productive cacao plants and ensure there will be cocoa for chocolate tomorrow … Database project. The genome sequence was assembled by the plant team at the  HudsonAlpha Institute for Biotechnology . …
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Informatics Advisory Committee
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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Georg Rath
… Mr. Rath has been leading the Systems Infrastructure Team at the JGI since 2020. Before …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… mosses.  New research identifies sex chromosomes in the plant and illuminates the significant role sex plays in how … majority of the ground cover in peatlands. These boggy ecosystems are acidic and have very little oxygen, which is tough on the type of microbes that break down plant matter. This means plants don’t fully decompose in …
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MGM Workshop at Fisabio Summer School 2025
… will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by …
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Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
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