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Gaia: An AI-enabled genomic context–aware platform for protein sequence annotation
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Connecting chemical and protein sequence space to predict biocatalytic reactions
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A Step Toward Controlling Soybean Rust
… causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science … JGI Flagship plant genome , and JGI  published its genome sequence in 2010.       …
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Kjiersten Fagnan
… and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… Congratulations to Susannah Tringe , one of eight scientists and engineers who received the 2020 … Tringe, a microbiologist, was recognized for “advances in sequence-based studies of microbial assemblies, revealing … the roles of microbial communities in carbon cycling, in interactions with plants, and as drivers of methane …
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… Ancient  Chloroflexota s ditched their flagella and other traits when … place: hot spring-dwelling bacteria from the phylum C hloroflexota . Research shows that flagella were lost in other forms of  Chloroflexota that adapted to marine environments … ) conducted by the U.S. Department of Energy Joint Genome Institute …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … and a blotchy yellowing of leaves, a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps researchers to …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis is one of … “Distribution of predominant high-temperature archaeal and bacterial lineages in Yellowstone National Park,” as well as …
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Yasuo Yoshikuni
… Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, … organisms, modulating microbe-microbe and plant-microbe interactions in various environments to improve crop yield, …
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