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Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth Promoting … mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and … on here is an experimental study of root colonization by resident phages of a plant growth promoting bacterium. …

… program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established … work across platforms. … This work was partially supported by awards from US Department of Energy (DOE) Office of … DE-SC0021350, and DE-AC02-05CH11231. Partial support by US National Science Foundation awards DEB1840243, …

… samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed the soil samples, the JGI offered 7 … and Proteobacteria to be the most common phyla of bacteria sequenced from the metagenomic soil samples from the four … to the body of scientific knowledge that can be accessed by the rest of the community. These high school students now …

… delivering the (baked) goods – a retirement cake adorned by a JGI helix motif. Ray’s wife Deb, delivered a mask for … debuted for the crowd before the event segued to remarks by the leadership of the DOE Office of Biological and … acknowledging the vast list of accomplishments achieved by Ray over these 15 years, in service to JGI, Berkeley Lab, …

… genome duplication occurs within a single species. By contrast, “allopolyploids” arise when different ancestral … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … clearly identifies the four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is …

The archaeal genome was detected in samples collected by Stephen Quake’s team at Yellowstone National Park’s … The researchers applied mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced separately. From these samples, 111 …

… kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … program,  described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome … of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program …

… . “After discussing the project with him, I was inspired by his enthusiasm and drive to give his students this … experience. My current career path was heavily influenced by my own high school biology teacher, who helped connect me … which was approved as a Director’s Science project by JGI Director  Nigel Mouncey .” Eloe-Fadrosh decided, “If …

Over its 23-year history, JGI has produced more than 13 petabytes of data, accessible through the Genome Portal. “The … updated functionality, such as: The ability to select data by type or taxonomic group The ability to see, at a glance, … volunteering to participate in a user research session by contacting the JGI User Experience Group — once you …

… biofuel production and more. … This work was funded by the US-National Science Foundation grants OCE-0728391, …