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Introducing New Members of the JGI User Executive Committee
… to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell … Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would like to help advance JGI …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … Berkeley National Laboratory (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an … fermentative end products of five previously uncharacterized prokaryotes, including two bacteria isolated by their …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a … Nature. 428, 529–535 (2004). doi:10.1038/nature02399 Schmutz, J., Martin, J., Terry, A. et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431, 268–274 (2004). …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a … to their economies. It also plays an important role in soil health through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as a …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … a month and a half later. In September, I went to a centralized computer room, because that was what existed back then, … And as a result, there’s been a lot of work on open pond systems and infrastructure and growing microalgae. And to …
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Integrating Experimentation with Data
Seattle, Washington.   Topics will include:  environmental microbiomes biodesign and synthetic biology AI/ML-enabled … to stay informed … The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user … worldwide to explore complex biological and environmental systems using advanced experimental and informatic tools at …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … microbes, and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in … be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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Tanja Woyke Elected to American Academy of Microbiology
Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in … Genomics Department Head for the Environmental Genomics and Systems Biology Division of the Lab’s Biosciences Area since … at the 2019 New Lineages of Life (NeLLi) Meeting organized by the JGI, were also among the AAM Fellows in this …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … carbon and nitrogen fixers in alpine and high latitude ecosystems, deciphering their internal molecular mechanisms can … alga genome) and  MycoCosm (for the fungus genome) to aid analysis. Many of the results were unexpected. For example, …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific contribution? This … students (and their mentors) how to begin establishing a professional presence through getting credit for any …
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JGI@25: Fueling Investigation into Methane-Making Microbes
In honor of the JGI's 25th anniversary in 2022, we have revisited a … around the world, encompassing 54 researchers from 14 organizations across nine countries. Learn more about the … capable of knocking down human RNA the way that CRISPR-Cas9 systems snip DNA. This could eventually lead to applications …
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Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill
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