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Genomic analysis of 94 SEMIA strains isolated from common bean nodules: species diversity and genes related to nodulation, nitrogen fixation, and tryptophan metabolism
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JGI Announces 2025 New Investigator Portfolio
… You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel … explore microbial and plant interactions across unique ecosystems, from alpine soils to tropical glaciers.  Proposals are accepted …
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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant … infections can affect the interactions within their ecosystems. Summary Microbes drive the energy and nutrient … was done by the JGI, and proteomics and metabolomics analysis and microscopy at EMSL. The team infected the …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … proteins. PhycoCosm’s built-in connection to the DOE Systems Biology Knowledgebase (KBase) also allows … microbial and metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing …
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New Research Sheds Light on Diversity in the Deep Sea
… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … survive in very hot, high-pressure and chemically-rich ecosystems. This means they hold clues for understanding how … metagenomic sequencing to the study as well as  genome analysis, providing authors a more complete picture of the …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … staff, Biosciences and Berkeley Lab leadership, the half-dozen JGI advisory committees and its primary funders at the … JGI supports, include JGI’s emerging leadership role in a Microbiome Data Science effort (pages 37-39) and the …
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Access to Rock Star Scientists
… their work delivered during the 5th anniversary celebration of the internship program. Candace Cole, UC Merced JGI … : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has further confirmed by … Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and really open to …
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Boosting Small Molecule Production in Super “Soup”
… still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have … would be transformative at industrial scales. “Cell-free systems have been really powerful at finding ways to accelerate bio-design and identifying the best sets of enzymes that enable synthesis of sustainable chemical …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives during … at the DOE Joint Genome Institute in 2004. The main object of her research was the symbiont community of a gutless … is the Microbial Science Program Head as well as our Deputy of User Programs. Click to learn more about the program's …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the … abundant in the drier parts of Australia with lower quality soils and even in the desert areas with poor rainfall. That … also thrive in areas that receive a lot of rain.  Previous analysis of the E. grandis reference genome, an …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … was able to assess absolute time estimates for major colonization events. It was previously assumed, due to the wide … — including the eelgrass genome assembly that enabled analysis of the whole genome duplication event — …
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