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2025 Progress Report
… demonstrate how their laboratory and data science efforts support users, advance foundational science and enable …
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Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor Suzanne Sindi from … Mouncey and program organizers Wang, Visel and Sindi, along with UC Merced Undergraduate Research Opportunities … explained: “One of the hallmarks of JGI is our diverse workforce and our diverse collaborators around the world. That …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change impact on marine microbial … ocean known as “The Blob.” The event was recorded during a long-term study of microbial communities in the northeastern … flux in marine microbial communities. Using the JGI-generated data, Sachia Traving, a former postdoctoral fellow …
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JGI@25: Building a Better Bean
… in soil health through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as … was published online June 8, 2014 in the journal Nature Genetics . “Common beans are a major societal crop for those … peanuts, black-eyed peas, soybeans and chickpeas. While no longer under the umbrella of the JGI, McClean and Schmutz …
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JGI@25: Roots of a Mutualist Relationship
… challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal … more multidisciplinary teams. The work also paved the way for a longstanding collaboration between researchers at the JGI …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Virus-Microbe Interactions of Mud Island Mangroves
… the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his … as a computational biologist. My primary future goal is to form a startup.” …
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JGI Announces 2025 New Investigator Portfolio
… Gilman, Louis Graf, Yuxi Guo, Shaomei He, Vayu Hill- Maini, Forrest Lefler, Pok Man (Bob) Leung and Huang Li; [middle] … courtesy of the researchers) Each year, the JGI searches for novel research projects from PIs who have not led any … find a list of researchers whose proposals were accepted for 2025. Utilizing the JGI’s resources, these researchers …
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JGI Early Career Researchers Featured in mSystems Special Issue
… sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA stable … Eloe-Fadrosh’s Environmental Genomics group, makes a pitch for readers to get involved in the developing field of virus …
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Better Crops With a Pointillist Approach to Plant Genomics
… using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and …
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An Automated Tool for Assessing Virus Data Quality
… virus sequences vary widely. In a previous effort, an international consortium recommended specific … perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps … these sequences may be tainted by the presence of non-viral genes. Up to this point, there has been a lack of fast and …
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