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Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria
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Chloroflexi CL500-11 Populations That Predominate Deep-Lake Hypolimnion Bacterioplankton Rely on Nitrogen-Rich Dissolved Organic Matter Metabolism and C1 Compound Oxidation
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Natural Prodcast Episode 15: Katherine Duncan
… was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … Duncan: Yeah. I love actinomycetes. Dan Udwary: Tell us why. I mean, I know, but I think– Alison Takemura: I want to … both of those things have still very much done to be excellently. Dan Udwary: For sure. Kate Duncan: Not that …
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Partnerships Development Team
… community at large with access to high-throughput sequencing and other resources at the JGI for projects of … technology called chassis-independent recombinase-assisted genome engineering (CRAGE), which offers single-step genomic integration and prototyping of complex …
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JGI Advisory Committees Code of Conduct
Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … ecosystem. Their trust hinges on sustaining our record of excellence and respect, and for principles of integrity, …
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User Support Analysis Group
… for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product … development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … to soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene …
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User Support
The JGI Project Management Office carries out a number of activities to facilitate … that will be subject to the DOE JGI’s capabilities for sequencing, synthesis and/or metabolomics. Once materials … of your sequencing project at any time by logging on to the Genome Portals using your JGI login. After …
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities … automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables … CRISPR gRNA design tool  … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, …
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic reprogramming. … between the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in one proposed research project. For this project, RNA sequencing was done by the JGI, and proteomics and …
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Mission
Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … of Energy.   The JGI provides integrated high-throughput sequencing, DNA design and synthesis, metabolomics and … plastics. This drives the DOE’s focus on developing lignocellulosic biomass as a clean, renewable and sustainable …
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Description of Candidatus Mesopelagibacter carboxydoxydans and Candidatus Anoxipelagibacter denitrificans: Nitrate-reducing SAR11 genera that dominate mesopelagic and anoxic marine zones
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