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Webinar: PhycoCosm Tutorial
… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species
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Micro-Scale Applications Group
… technology in order to enhance the quality of single-cell genomes and directly link functional information with … access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling …
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Igor Grigoriev
… of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the … Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched …
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Next-generation transcriptome assembly
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then … a wide range of environments. A similar proposal focused on diatom genomes from  Thomas Mock of the University of East …
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Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals
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A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … through more than 5,000 data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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Data Ecosystem
… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …
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Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic Hyphomycete Clavariopsis aquatica
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Comparative Genomics and Transcriptomics to Analyze Fruiting Body Development in Filamentous Ascomycetes
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