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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm … fungi. Their analysis identified fungal gene families that help determine if these fungi act as friends or … previously published fungal genomes on the JGI data portal MycoCosm . They looked for genes known to be involved in …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by … The Plant Program advances our understanding of plants’ biological and … solutions for energy, agriculture and the environment. At its core, the program investigates photosynthesis — the …
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Natural Prodcast Episode 7: Ben Shen
… to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists … conference, and he and the conveners put on a great program. This is one of my favorite interviews so far – you’re … This is really a museum of diversity. It’s probably a snapshot of all the evolution over the past 70, 80 years. And …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural … in China and involving Francis Martin from the Institut National de la Recherche Agronomique (INRA) in France and … and annotations are available on JGI’s fungal portal  MycoCosm . Based on these analyses, we conducted further …
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Natural Prodcast Episode 2: The Primer, Part 2
… to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists … is Dan, and you’re listening to the second episode of the Natural Prodcast. This is part 2 of our “primer” episode, so … and the state of the field today. So, not as much of a preamble this time. Let’s jump right in. — DAN: So secondary …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … fungal guilds in a range of different locations. They sampled soils in four forest ecosystems, extracted RNA to … Grigoriev said. All of these genomes are available at  MycoCosm . If initially, the task of mapping fungal RNA to …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… Phytozome workshop held during the June 2022 CROPS Conference at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of Energy Joint …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … Publication: Tyler BM et al. Phytophthora genome sequences uncover … . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… fungi of Chytridiomycota (the “chytrids”).  A collaborative team led by Joey Spatafora at Oregon State University, Jason … at the time. Following the publication of their paper in 2011, Dr. Sekimoto from University of British Columbia and Dr. … Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed …
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PhycoCosm Tutorial
… interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute … a US Department of Energy Office of Science user facility at Berkeley Lab. Presented by Igor Grigoriev, Alan Kuo, Sara …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… been  approved through the annual  Community Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). The … Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed …
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Philympics 2021: Prophage Predictions Perplex Programs
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