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Natural Prodcast Episode 2: The Primer, Part 2
… could be a molecule that’s embedded in their – what do you call that – I want to say like lipid bilayer, you know, in … that I studied in the past were a group of bacteria called the Frankia . And so the Frankia are bacteria that … amino acids build into peptides. DAN: So, yeah, so historically, it’s been a little bit difficult sometimes to …
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Plant Program
… and protein folding models, to improve the accuracy of functional predictions and speed up genome analysis. … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes representing the …
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Natural Prodcast Episode 4: Nancy Keller
… well, two things. My PhD work was with a fungal pathogen called Cochliobulis heterostrophis . This is a very well … it produces a secondary metabolite or natural product called T-toxin. And this kills corn plants. So I became very … it was in all the maize. So the main food that you ate was called Papa, which is this maize meal. And he was talking …
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Natural Prodcast Episode 15: Katherine Duncan
… Udwary: Right. Kate Duncan: But most people that know me call me Kate. Dan Udwary: Great. So we’ve got Kate here … to sort of compare, conceptually, that data with genomics and the kind of things that I do with genome … detected. Dan Udwary: You’re making me so happy that I’m in genomics. [LAUGHS] Kate Duncan: Yeah, right? And, you know, …
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A call for standardized classification of metagenome projects
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Who We Are
… of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at … HudsonAlpha Institute for Biotechnology , and the Arizona Genomics Institute. We are located in the Integrative Genomics Building in the heart of the Berkeley Lab campus, …
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Building Sphagnum Genomic Resources
… The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to … unparalleled model system for ecological and evolutionary genomics .” Understanding the nature and genetic basis of functional traits in sphagnum growth and decomposition is …
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Enlarging Windows into Understanding Gene Functions
… proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as … there is no shortage of fungal genomes anymore, but their functional interpretation is as tough as it has been 10 … to further their research, watch the JGI Engagement Webinars series. Letters of Intent for the next annual …
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Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae
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JGI Mural
… The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic JGI contributions to advancing the frontiers of environmental and energy genomics. Click on the images below to learn about the …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … some fungal species, other fungi will fill in needed functionalities. This work also shows new overlap between … said, the 1000 Fungal Genomes project, together with other CSP projects, had sequenced over 2,000 fungal genomes. The …
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From Competition to Cooperation
… these datasets will assist researchers in moving toward functional genomics studies to learn more about the inner workings of … DE-AC02-05CH11231 within the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems …
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