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JGI Workshops at PAG
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… and bacteria are more active in fixing and metabolizing nitrogen, a key ecosystem nutrient. The Impact This study is … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … National Laboratory, to create the database. JGI provided metagenome and metatranscriptome sequences, as well as …
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JGI at the AGU Fall Meeting
Restoration on Intensive Agricultural Lands Changes Nitrogen Cycling Microbial Communities and Reduces N2O … Aerodyne Research Inc.: “Subsurface measurements of nitrogen dynamics in agricultural soil” 4pm Convention … talk): “Subsurface stable isotope approaches for resolving nitrogen transformations in the critical zone” 8:03am …
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Making a Lichen Together
… crops. And because lichens are dominant carbon and nitrogen fixers in alpine and high latitude ecosystems, … can help researchers better model global carbon and nitrogen cycling. Summary To shed light on lichen, an … for the symbiosis, including those involved in carbon and nitrogen exchange between the lichen partners. This genomic …
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Single Cell Research Group
… genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., … information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. …
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How to Target a Microbial Needle within a Community Haystack
… of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their … pools before being subjected to genome sequencing. Various fixation protocols were also tested as part of the method …
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A Collaboration to Improve Plant Genome Annotations Across Species
… comparable study, where plants were subjected to three nitrogen sources (urea, ammonium, and nitrate) as the sole nitrogen source. We looked at the plant’s response in the … observed that treatment with nitrate versus urea showed nitrogen and amino acid-specific metabolic pathways were …
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Tapping the treasure trove of atypical phages
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A Grass Model to Help Improve Giant Miscanthus
… life cycle. For example, in the fall the plants store nitrogen in its rhizomes – in the form of the nitrogen-rich amino acid asparagine – and remobilize this nitrogen in the spring so that the stems and leaves can grow …
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A Grass Model to Help Improve Giant Miscanthus
… life cycle. For example, in the fall the plants store nitrogen in its rhizomes – in the form of the nitrogen-rich amino acid asparagine – and remobilize this nitrogen in the spring so that the stems and leaves can grow …
Learn more
Natural Prodcast Episode 24: Jackie Winter and SMC
… mentor students, teaching classes, and really setting the stage for what I really wanted to do and getting to– so I … rest of the archaea and fungal genomes and then work on metagenomes. So yeah. So we’ve taken every public sequence … it’s a very long process in order to go from the first stage of discovery to a molecule that’s actually helping …
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A Shrubbier Version of Rubber
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