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Triggering Morel Fruiting
… morel mycelium to acquire carbon from lignocellulosic-abundant matters such as plant litter and to incorporate the … China, and a wild black morel strain M. importuna CCBAS932 from the forests of France, were sequenced and annotated … morel to mobilize organic carbon from lignocellulosic-abundant matters such as fallen leaves and woods above forest …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists …
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Plant Pan-Genomics Comes of Age
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Microbiome Data Science Team
… and visualization of big data. … Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. … of Earth’s microbiomes. Nature Biotechnol . 39(4):499-509. Danko D. et al. (2021) A global metagenomic map of urban …
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Daniel van der Lelie
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A Natural Mechanism Can Turbocharge Viral Evolution
… environments. The Science The first step in the deadly dance between a virus and microbial cell is an embrace. For … an organism’s fitness. Moreover, the discovery of more than 30,000 DGRs in this analysis, a 20-fold increase over what … sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and is …
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Clades of huge phages from across Earth’s ecosystems
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User Advisory Committees
Science Advisory Committee is chartered to offer advice, guidance and counsel on the effective management and strategic … & Algal Advisory Committee is chartered to offer advice, guidance and counsel on the effective management and strategic … management and strategic objectives of the microbial and metagenome programs. The committee serves as the program's key …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
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Uncovering Novel Genomes from Earth’s Microbiomes
… and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … out to more than 200 researchers around the world in accordance with the JGI data use policy. “I felt it is important … BGCs in  IMG/ABC (Atlas of Biosynthetic Gene Clusters) by 31%. ( Listen to this JGI Natural Prodcast episode on genome …
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You Can Move, But You Can’t Hide
… currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to … of Energy Joint Genome Institute (https://ror.org/04xm1d337), and the National Energy Research Scientific Computing …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… generate high-quality genome assemblies and annotations for 35 species representing all major evolutionary lineages in … of Energy operated under Contract No. DE-AC02-05CH11231.This work was supported by US National Science Foundation … (NSF; grant PRFB IOS-1907220 to D.B.M.; grant MCB-1856143 to R.J.S.; grant DEB-1911459 to P.G.W.; grant MRI-1828479 …
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