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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the … the strategy of lysogeny. The ability of the virus to tag along with the host has earned this strategy a riff, …
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Exploring the Diversity of the American Prairie’s Switchgrass
… plan to begin to link the plant’s varying traits — height, biomass, hardiness to cold, etc. — to its genes. The …
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Exploring Phages at JGI
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How Filamentous Fungi Sense Food
… array of simple and complex components present in plant biomass. This is of interest for bioenergy researchers … in what order to most efficiently degrade the plant biomass. In order to learn more about these regulatory … Joint Genome Institute Community Science Program grant (CSP 982), and funds from the Fred E. Dickinson Chair of Wood …
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Natural Prodcast Episode 3: The Primer, Part 3
… biology got more sophisticated around the 80s and the 90s. And so we started to be able to explore DNA sequencing …
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John Vogel
… lines in an effort to create improved varieties for biomass production. He did his postdoctoral studies at the … Brachypodium. Genetics, 223 (2), art. no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 Gradual polyploid … Varoquaux, et. al.N. 2019 Transcriptomic analysis of field-droughted sorghum from …
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … such as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… do they adapt by changing what macromolecules are in their biomass, because that affects the quality of the food of … in how general environmental stressors, um, alter microbial biomass and then what the consequences are for the …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … of stable, synthetic microbial communities to take advantage of their joint metabolisms. Because, together, microbes … recent advance in CRAGE is the addition of CRISPR enzyme Cas9. Originally, CRAGE was only used to  insert genes of …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… the low maintenance, it can produce an impressive amount of biomass which could then be converted into sustainable … been working on identifying switchgrass genes related to biomass production, drought tolerance, and other traits that … growing by the side of the road become a key player in biomass-based fuels.   … P. virgatum on Phytozome … Plant …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… and climate resilience of algae — for potential use as biomass or in biomass conversion to biofuel. Summary Water temperatures … of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department of …
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Busting the Unbreakable Lignin
… lignin.  The Impact Traditional methods for breaking down biomass use aerobic methods (those using oxygen) to remove … and make use of it, it would change the entire landscape of biomass production and bioproduct engineering. Summary That … (MAO), Institute for Collaborative Biotechnologies grants W911NF-09–D-0001 and W911NF-19-2-0026 (MAO), US Army Research …
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